MuG - FASTQ Pipelines
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Contents:

  • Requirements and Installation
  • Full Installation
  • Pipelines
  • Tools for processing FastQ files
  • Utility Functions
  • Continuous Integration with Travis
  • Setting up and using a Docker Container
  • Architectural Design Record
  • License

Test Datasets:

  • Testing
  • Test Data for ChIP-seq pipeline
  • iDamID-Seq Test Data
  • Test Data for MNase-seq pipeline
  • Test Data for RNA-seq pipeline
  • WGBS Test Data
  • Hi-C Test Data
MuG - FASTQ Pipelines
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