MuG - FASTQ Pipelines
latest

Contents:

  • Requirements and Installation
  • Full Installation
  • Pipelines
  • Tools for processing FastQ files
  • Utility Functions
  • Continuous Integration with Travis
  • Setting up and using a Docker Container
  • Architectural Design Record
  • License

Test Datasets:

  • Testing
  • Test Data for ChIP-seq pipeline
  • iDamID-Seq Test Data
  • Test Data for MNase-seq pipeline
  • Test Data for RNA-seq pipeline
  • WGBS Test Data
  • Hi-C Test Data
MuG - FASTQ Pipelines
  • Docs »
  • Python Module Index

Python Module Index

p | t
 
p
process_align_bowtie
process_align_bwa
process_align_bwa_mem
process_biobambam
process_bs_seeker_aligner
process_bs_seeker_filter
process_bs_seeker_index
process_bsgenome
process_chipseq
process_damidseq
process_genome
process_hic
process_iNPS
process_macs2
process_mnaseseq
process_rnaseq
process_trim_galore
 
t
- tests
    tests.test_pipeline_chipseq
    tests.test_pipeline_genome
    tests.test_pipeline_idamidseq
    tests.test_pipeline_mnaseseq
    tests.test_pipeline_rnaseq
    tests.test_pipeline_tb
    tests.test_toolchains
tool

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